topic 03. Pairwise sequence alignment
Global alignment
Local alignment
Affine Gap Penalties - The Gotoh Algorithm
Gotoh, O. An improved algorithm for matching biological sequences. J Mol Biol 162, 705–708 (1982).
Linear space algorithm
Myers, E. W. & Miller, W. Optimal alignments in linear space. Bioinformatics 4, 11–17 (1988).
CHAO, K.-M., HARDISON, R. C. & MILLER, W. Recent Developments in Linear-Space Alignment Methods: A Survey. J. Comput. Biol. 1, 271–291 (1994).
Supporting Materials
Bellman, R. The theory of dynamic programming. Bulletin of the American Mathematical Society 60, 503–515 (1954).
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