topic 10. ​Protein functional classes prediction

Machine learning

Feature reduction​

• Supporting Materials

  1. A (not so) Quick Introduction to Protein Function Prediction by Predrag Radivojac

  2. The Critical Assessment of protein Function Annotation algorithms (CAFA)

  3. CAFA1: Radivojac, P. et al. A large-scale evaluation of computational protein function prediction. Nat. Methods 10, 221–7 (2013).

  4. CAFA2: Jiang, Y. et al. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biol.17, 184 (2016).

  5. PSLDoc: Chang, J.-M. M. et al. PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis. Proteins 72, 693–710 (2008)

  6. PSLDoc2: Chang, J.-M. M. et al. Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations. PLoS ONE 8, e75542 (2013)