topic 14. Computational epigenetics
Chromatin biology
Nuclear organization
Supporting Materials
Epigenetics
Collected papers for Epigenome Roadmap
Epigenetics by Nature Reviews Genetics
2020 STAT115 Lect12.1 Epigenetics by Xiaole Shirley Liu
Genome Organization
染色體結構捕捉技術 by 陳政儀
HiC peak calling method: Rao, S. S. et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159, 1665–80 (2014).
Genome segmentation: Ernst, J. & Kellis, M. ChromHMM: automating chromatin-state discovery and characterization. Nature Methods 9, 215–216 (2012).
a nice introduction by Jian Ma, Comparing 3D Genome Organization | CGSI 2019